PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00244.1_g00004.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 308aa    MW: 34442.6 Da    PI: 7.9986
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00244.1_g00004.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3103.41.2e-3232133199
                              EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                              f+kv tpsdv+k++rlv+pk++ae++    ++++e++  l +ed++g+sW+++++y+++s++yv+tkGW++Fvk+++L++gD+v F
  Rsa1.0_00244.1_g00004.1  32 FDKVVTPSDVGKLNRLVIPKQHAERYfpldSSSNEKGLLLNFEDLTGKSWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDIVSF 117
                              89****************************66677899************************************************ PP

                              EE-SSSEE..EEEEE-S CS
                       B3  83 kldgrsefelvvkvfrk 99 
                              ++    + +l++ ++r+
  Rsa1.0_00244.1_g00004.1 118 QRCV-GDSRLCIDWRRR 133
                              *653.566679999997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.6E-4127134IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.62E-3029128IPR015300DNA-binding pseudobarrel domain
CDDcd100171.55E-2630128No hitNo description
SMARTSM010199.2E-2632134IPR003340B3 DNA binding domain
PROSITE profilePS5086315.25632134IPR003340B3 DNA binding domain
PfamPF023629.2E-3032133IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MMTTLSLGRE GEEDKDAEAK KPIEEVEREH MFDKVVTPSD VGKLNRLVIP KQHAERYFPL  60
DSSSNEKGLL LNFEDLTGKS WRFRYSYWNS SQSYVMTKGW SRFVKDKKLD AGDIVSFQRC  120
VGDSRLCIDW RRRPKVPDYP TSTAHFAAGA MFPRFYSFPT ATTSTCYNLY NHQQPRHHHI  180
GYGYPLIPRE FGYGYFVRSV DQRAVVADPL VIESVPVMMH GGARVSQEVV GTAGKRMRLF  240
GVDMECGESG VTNSTEEESS SSGGSLPRAG GGGASSSSSL FQLRLGSSSE DDHFSKKGKS  300
SLPFNLDQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A3e-472913311117DNA-binding protein RAV1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2324910.0AC232491.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB049N04, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013747678.10.0PREDICTED: B3 domain-containing transcription factor NGA1-like
SwissprotO827991e-160NGA1_ARATH; B3 domain-containing transcription factor NGA1
TrEMBLA0A078IFR40.0A0A078IFR4_BRANA; BnaA04g26820D protein
STRINGBra040478.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13072899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.11e-141B3 family protein